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Gene embeddings capture communication pathways from 10x Visium human lymph node. a. H&E stain of human lymph node tissue. b. Schematic of integrated GSPA using spARC. c. PHATE visualization of gene embedding, colored by gene module assignment. d. Enrichment of gene modules spatially. e. Cell-cell communication networks derived from gene-gene interactions with OmniPathDB.

Journal: bioRxiv

Article Title: Mapping the gene space at single-cell resolution with gene signal pattern analysis

doi: 10.1101/2023.11.26.568492

Figure Lengend Snippet: Gene embeddings capture communication pathways from 10x Visium human lymph node. a. H&E stain of human lymph node tissue. b. Schematic of integrated GSPA using spARC. c. PHATE visualization of gene embedding, colored by gene module assignment. d. Enrichment of gene modules spatially. e. Cell-cell communication networks derived from gene-gene interactions with OmniPathDB.

Article Snippet: According to their website, 10x obtained fresh frozen human lymph node tissue from BioIVT Asterand Human Tissue Specimens.

Techniques: Staining, Derivative Assay